- Logistics & Protocol Department
- Department of Administrative & Special Technical Laboratory Personnel (STLP)
- Department of Teaching and Research Staff (TRS)
- Department of Studies & Internships
- Department of Collective & Individual Bodies & Committees
- Emergency Planning and Management Office (EPM)
- Department of Expenditure & Community Support Framework (CSF)
- Payroll & Compensations Department
- Procurement & Property Department
- Budget Department
- Financial data
Directorate of Technical Services
Library and Informatics Directorate
- Telecommunications and Networks Department
- Information Systems Management Department
- Educational Process Support Department
- Library and Information Center Department
Directorate for the Financial and Administrative Support Unit (FASU)
- FASU Administrative Support Department
- FASU Accounting and Financial Management Department
- Department of Project Planning, Development, and Management
Student Welfare Department
- Student Services Department
- Health Care and Social Welfare Department
- Kindergarten Department
- Heraklion Dormitory Management Office
- Dormitory and Student Services Management Office (Sitia)
- Student Services Management Office (Chania)
Independent Departments
- Rector’s Secretariat
- Department of Public & International Relations
- Maintenance Office (Chania Branch)
- Liaison and Career Support Office
- Legal Advisor Office
- Student Ombudsman’s Office